Heterocyclic compound

A heterocyclic compound or ring structure is a cyclic compound that has atoms of at least two different elements as members of its ring(s).[1] Heterocyclic organic chemistry is the branch of organic chemistry dealing with the synthesis, properties, and applications of organic heterocycles.[2]

Structures and names of common heterocyclic compounds
Pyridine, a heterocyclic compound

Examples of heterocyclic compounds include all of the nucleic acids, the majority of drugs, most biomass (cellulose and related materials), and many natural and synthetic dyes. More than half of known compounds are heterocycles.[3] 59% of US FDA-approved drugs contain nitrogen heterocycles.[4]

Classification

The study of organic heterocyclic chemistry focuses especially on organic unsaturated derivatives, and the preponderance of work and applications involves unstrained organic 5- and 6-membered rings. Included are pyridine, thiophene, pyrrole, and furan. Another large class of organic heterocycles refers to those fused to benzene rings. For example, the fused benzene derivatives of pyridine, thiophene, pyrrole, and furan are quinoline, benzothiophene, indole, and benzofuran, respectively. The fusion of two benzene rings gives rise to a third large family of organic compounds. Analogs of the previously mentioned heterocycles for this third family of compounds are acridine, dibenzothiophene, carbazole, and dibenzofuran, respectively.

Heterocyclic organic compounds can be usefully classified based on their electronic structure. The saturated organic heterocycles behave like the acyclic derivatives. Thus, piperidine and tetrahydrofuran are conventional amines and ethers, with modified steric profiles. Therefore, the study of organic heterocyclic chemistry focuses on organic unsaturated rings.

Inorganic rings

Some heterocycles contain no carbon. Examples are borazine (B3N3 ring), hexachlorophosphazenes (P3N3 rings), and tetrasulfur tetranitride S4N4. In comparison with organic heterocycles, which have numerous commercial applications, inorganic ring systems are mainly of theoretical interest. IUPAC recommends the Hantzsch-Widman nomenclature for naming heterocyclic compounds.[5]

Notes on lists

  • "Heteroatoms" are atoms in the ring other than carbon atoms.
  • Names in italics are retained by IUPAC and do not follow the Hantzsch-Widman nomenclature
  • Some of the names refer to classes of compounds rather than individual compounds.
  • Also no attempt is made to list isomers.

3-membered rings

Although subject to ring strain, 3-membered a heterocyclic rings are well characterized.[6]

Three-membered rings with one heteroatom

HeteroatomSaturatedUnsaturated
BoronBoriraneBorirene
NitrogenAziridineAzirine
OxygenOxirane (ethylene oxide, epoxides)Oxirene
PhosphorusPhosphiranePhosphirene
SulfurThiirane (episulfides)Thiirene

Three-membered rings with two heteroatoms

HeteroatomsSaturatedUnsaturated
2× NitrogenDiaziridineDiazirine
Nitrogen + oxygenOxaziridineOxazirine
2× OxygenDioxirane
(highly unstable)

4-membered rings

Four-membered rings with one heteroatom

HeteroatomSaturatedUnsaturated
NitrogenAzetidineAzete
OxygenOxetaneOxete
PhosphorusPhosphetanePhosphete
SulfurThietaneThiete

Four-membered rings with two heteroatoms

HeteroatomsSaturatedUnsaturated
2× NitrogenDiazetidineDiazete
2× OxygenDioxetaneDioxete
2× SulfurDithietaneDithiete

5-membered rings

Five-membered rings with one heteroatom

HeteroatomSaturatedUnsaturated
AntimonyStibolaneStibole
ArsenicArsolaneArsole
BismuthBismolaneBismole
BoronBorolaneBorole
NitrogenPyrrolidine ("Azolidine" is not used)Pyrrole ("Azole" is not used)
OxygenTetrahydrofuranFuran
PhosphorusPhospholanePhosphole
SeleniumSelenolaneSelenophene
SiliconSilacyclopentaneSilole
SulfurTetrahydrothiopheneThiophene
TelluriumTellurophene
TinStannolaneStannole

Five-membered rings with two heteroatoms

The 5-membered ring compounds containing two heteroatoms, at least one of which is nitrogen, are collectively called the azoles. Thiazoles and isothiazoles contain a sulfur and a nitrogen atom in the ring. Dithiolanes have two sulfur atoms.

HeteroatomsSaturatedUnsaturated (and partially unsaturated)
2× nitrogenImidazolidine
Pyrazolidine
Imidazole (Imidazoline)
Pyrazole (Pyrazoline)
Oxygen + sulfur1,3-Oxathiolane
1,2-Oxathiolane
Oxathiole (Oxathioline)
Isoxathiole
Nitrogen + OxygenOxazolidine
Isoxazolidine
Oxazole (Oxazoline)
Isoxazole
Nitrogen + sulfurThiazolidine
Isothiazolidine
Thiazole (Thiazoline)
Isothiazole
2× oxygenDioxolane
2× sulfurDithiolaneDithiole

Five-membered rings with at least three heteroatoms

A large group of 5-membered ring compounds with three or more heteroatoms also exists. One example is the class of dithiazoles, which contain two sulfur atoms and one nitrogen atom.

HeteroatomsSaturatedUnsaturated
N N NTriazoles
N N OFurazan
Oxadiazole
N N SThiadiazole
N O ODioxazole
N S SDithiazole
N N N NTetrazole
N N N N OOxatetrazole
N N N N SThiatetrazole
N N N N NPentazole

6-membered rings

Six-membered rings with one heteroatom

HeteroatomSaturatedUnsaturatedIons
AntimonyStibinin[7]
ArsenicArsinaneArsinine
BismuthBismin[8]
BoronBorinaneBorinineBoratabenzene anion
GermaniumGerminaneGermine
NitrogenPiperidine
(Azinane is not used)
Pyridine
(Azine is not used)
Pyridinium cation
OxygenOxanePyran
(2H-Oxine is not used)
Pyrylium cation
PhosphorusPhosphinanePhosphinine
SeleniumSelenaneSelenopyran[9]Selenopyrylium cation
SiliconSilinaneSiline
SulfurThianeThiopyran
(2H-Thiine is not used)
Thiopyrylium cation
TelluriumTelluraneTelluropyranTelluropyrylium cation
TinStanninaneStannine

Six-membered rings with two heteroatoms

HeteroatomSaturatedUnsaturated
Nitrogen / nitrogenDiazinaneDiazine
Oxygen / nitrogenMorpholineOxazine
Sulfur / nitrogenThiomorpholineThiazine
Oxygen / SulfurOxathianeOxathiin
Oxygen / oxygenDioxaneDioxine
Sulfur / sulfurDithianeDithiin
Boron / nitrogen1,2-Dihydro-1,2-azaborine

Six-membered rings with three heteroatoms

HeteroatomSaturatedUnsaturated
NitrogenTriazinaneTriazine
OxygenTrioxane
SulfurTrithiane

Six-membered rings with four heteroatoms

HeteroatomSaturatedUnsaturated
NitrogenTetrazine

Carborazine is a six-membered ring with two nitrogen heteroatoms and two boron heteroatom.

Six-membered rings with five heteroatoms

HeteroatomSaturatedUnsaturated
NitrogenPentazine

Six-membered rings with six heteroatoms

The hypothetical chemical compound with six nitrogen heteroatoms would be hexazine.

Borazine is a six-membered ring with three nitrogen heteroatoms and three boron heteroatoms.

7-membered rings

In a 7-membered ring, the heteroatom must be able to provide an empty π-orbital (e.g. boron) for "normal" aromatic stabilization to be available; otherwise, homoaromaticity may be possible. Compounds with one heteroatom include:

HeteroatomSaturatedUnsaturated
BoronBorepin
NitrogenAzepaneAzepine
OxygenOxepaneOxepine
SulfurThiepaneThiepine

Those with two heteroatoms include:

HeteroatomSaturatedUnsaturated
NitrogenDiazepaneDiazepine
Nitrogen/sulfurThiazepine

8-membered rings

HeteroatomSaturatedUnsaturated
NitrogenAzocaneAzocine
OxygenOxocaneOxocine
SulfurThiocaneThiocine

Borazocine is an eight-membered ring with four nitrogen heteroatoms and four boron heteroatoms.

9-membered rings

HeteroatomSaturatedUnsaturated
NitrogenAzonaneAzonine
OxygenOxonaneOxonine
SulfurThionaneThionine

Images of rings with one heteroatom

SaturatedUnsaturated
HeteroatomNitrogenOxygenSulfurNitrogenOxygenSulfur
3-atom ringAziridineOxiraneThiiraneAzirineOxireneThiirene
4-atom ringAzetidineOxetaneThietaneAzeteOxeteThiete
5-atom ringPyrrolidineOxolaneThiolanePyrroleFuranThiophene
6-atom ringPiperidineOxaneThianePyridinePyranThiopyran
7-atom ringAzepaneOxepaneThiepaneAzepineOxepineThiepine
8-atom ringAzocaneOxocaneThiocaneAzocineOxocineThiocine
9-atom ringAzonaneOxonaneThionaneAzonineOxonineThionine

Fused/condensed rings

Heterocyclic rings systems that are formally derived by fusion with other rings, either carbocyclic or heterocyclic, have a variety of common and systematic names. For example, with the benzo-fused unsaturated nitrogen heterocycles, pyrrole provides indole or isoindole depending on the orientation. The pyridine analog is quinoline or isoquinoline. For azepine, benzazepine is the preferred name. Likewise, the compounds with two benzene rings fused to the central heterocycle are carbazole, acridine, and dibenzoazepine. Thienothiophene are the fusion of two thiophene rings. Phosphaphenalenes are a tricyclic phosphorus-containing heterocyclic system derived from the carbocycle phenalene.

History of heterocyclic chemistry

The history of heterocyclic chemistry began in the 1800s, in step with the development of organic chemistry. Some noteworthy developments:[10]

  • 1818: Brugnatelli makes alloxan from uric acid
  • 1832: Dobereiner produces furfural (a furan) by treating starch with sulfuric acid
  • 1834: Runge obtains pyrrole ("fiery oil") by dry distillation of bones
  • 1906: Friedlander synthesizes indigo dye, allowing synthetic chemistry to displace a large agricultural industry
  • 1936: Treibs isolates chlorophyll derivatives from crude oil, explaining the biological origin of petroleum.
  • 1951: Chargaff's rules are described, highlighting the role of heterocyclic compounds (purines and pyrimidines) in the genetic code.

Uses

Heterocyclic compounds are pervasive in many areas of life sciences and technology.[2] Many drugs are heterocyclic compounds.[11]

See also

References

External links